Bioinformatics Data Analysis

Bulk RNA-Seq Analyses

Type of Experiment Type of Analysis
  • Bulk RNA-Seq (polyA or total RNA)
  • Small RNA-Seq (e.g. microRNA)
  • Differential expression analysis
  • Summary figures
  • Functional enrichments – KEGG, GO terms, etc.

DNA-Seq Analyses

Type of Experiment Type of Analysis
  • Whole Genome Sequencing
  • Exome-Seq
  • Germline and somatic variant calling and annotation
  • Copy Number Variation analysis
  • Structural Variation analysis

ChIP-Seq Analyses

Type of Experiment Type of Analysis
  • Transcription factor binding
  • Histone modifications
  • Peak calling
  • Motif enrichment

Single-Cell Analyses

Type of Experiment Type of Analysis
  • Single-cell RNA-Seq
  • Single-cell ATAC-Seq
  • Cell type clustering
  • Pseudotime analysis
  • Differential expression
  • Reporter gene expression
  • Functional enrichment

Custom Analyses

  • Figure generation
  • Custom data integration
  • Analysis of publicly available data
  • Variant identification from RNA-seq data
  • Differential expression for microbial RNA-seq
  • Isoform differential expression / Differential exon usage
  • Allele specific expression analysis
  • Exogenous/circulating RNA-seq analysis
  • Microarray data analysis
  • Analysis of targeted variant panel
  • Genome assembly